///////////////////////////////////////////////////////////////////////////////// ST_value nj(2007) book-pre1 Graph G's S(T):0.524142 book-pre2 Graph G's S(T):0.471132 ------------------------------------------------------------- nj(2007-15) pre1 Graph G's S(T):0.427187 pre2 Graph G's S(T):0.351794 pre1-rice(b=8) Graph G's S(T):0.576013 pre2-rice(b=8) Graph G's S(T):0.49459 pre1-rice(b=16) Graph G's S(T):0.465594 pre2-rice(b=16) Graph G's S(T):0.439778 ----------------------------------------------- nj(2008) dora1-pre1 Graph G's S(T):0.487411 dora1-pre2 Graph G's S(T):0.482618 dora2-pre1 Graph G's S(T):0.46157 dora2-pre2 Graph G's S(T):0.475387 -------------------------------------------- nj(rice-2008) d1-p1-b8 Graph G's S(T):0.503624 d1-p1-b16 Graph G's S(T):0.508153 d1-p2-b8 Graph G's S(T):0.49763 d1-p2-b16 Graph G's S(T):0.474975 d2-p1-b8 Graph G's S(T):0.503452 d2-p1-b16 Graph G's S(T):0.492281 d2-p2-b8 Graph G's S(T):0.489596 d2-p2-b16 Graph G's S(T):0.493829 ---------------------------------------------- upgma(2007) book-pre1 Graph G's S(T):0.524142 book-pre2 Graph G's S(T):0.471132 --------------------------------------------------- upgma(2007-15) pre1 Graph G's S(T):0.427187 pre2 Graph G's S(T):0.351794 pre1-rice(b=8) Graph G's S(T):0.576013 pre2-rice(b=8) Graph G's S(T):0.49459 pre1-rice(b=16) Graph G's S(T):0.465594 pre2-rice(b=16) Graph G's S(T):0.439778 ---------------------------------------------- upgma(2008) dora1-pre1 Graph G's S(T):0.487411 dora1-pre2 Graph G's S(T):0.482618 dora2-pre1 Graph G's S(T):0.46157 dora2-pre2 Graph G's S(T):0.475387 ---------------------------------------------------- upgma(rice-2008) d1-p1-b8 Graph G's S(T):0.503624 d1-p1-b16 Graph G's S(T):0.508153 d1-p2-b8 Graph G's S(T):0.49763 d1-p2-b16 Graph G's S(T):0.474975 d2-p1-b8 Graph G's S(T):0.503452 d2-p1-b16 Graph G's S(T):0.492281 d2-p2-b8 Graph G's S(T):0.489596 d2-p2-b16 Graph G's S(T):0.493829 ----------------------------------------------------------- quartet(2007) book-pre1 Graph G's S(T):0.856549 book-pre2 Graph G's S(T):0.755785 ----------------------------------------------------------- quartet(2007-15) pre1 Graph G's S(T):0.418311 pre2 Graph G's S(T):0.504066 pre1-rice(b=8) Graph G's S(T):0.472181 pre2-rice(b=8) Graph G's S(T):0.561546 pre1-rice(b=16) Graph G's S(T):0.579318 pre2-rice(b=16) Graph G's S(T):0.61914 ------------------------------------------------------- quartet(2008) pre1(d1-p1) Graph G's S(T):0.347207 pre2(d1-p2) Graph G's S(T):0.632892 pre1(d2-p1) Graph G's S(T):0.470037 pre2(d2-p2) Graph G's S(T):0.338116 --------------------------------------------------------------- quartet(2008-rice) d1-p1-b8 Graph G's S(T):0.828499 d1-p1-b16 Graph G's S(T):0.811279 d1-p2-b8 Graph G's S(T):0.819522 d1-p2-b16 Graph G's S(T):0.798682 d2-p1-b8 Graph G's S(T):0.840783 d2-p1-b16 Graph G's S(T):0.81404 d2-p2-b8 Graph G's S(T):0.83628 d2-p2-b16 Graph G's S(T):0.835719 //////////////////////////////////////////////////////////////////////////////// TV1.TV2.COS_value nj(2007) pre1 averege = 0.136509 square sum root = 6.38567 cos_value = 0.347691 pre2 averege = 0.130395 square sum root = 6.35256 cos_value = 0.371282 ---------------------------------------------------- nj(2007-15) pre1 averege = 0.15427 square sum root = 1.8345 cos_value = 0.351619 pre2 averege = 0.15508 square sum root = 1.85215 cos_value = 0.37094 pre1-rice(b=8) averege = 0.0643147 square sum root = 0.727892 cos_value = 0.507471 pre2-rice(b=8) averege = 0.0933362 square sum root = 1.12188 cos_value = 0.725118 pre1-rice(b=16) averege = 0.0573145 square sum root = 0.693105 cos_value = 0.822158 pre2-rice(b=16) averege = 0.0712431 square sum root = 0.808413 cos_value = 0.847463 ------------------------------------------------- nj(2008) pre1(d1-p1) averege = 0.106931 square sum root = 4.98775 cos_value = 0.472792 pre2(d1-p2) averege = 0.121357 square sum root = 5.64342 cos_value = 0.494139 pre1(d2-p1) averege = 0.119701 square sum root = 5.39475 cos_value = 0.499363 pre2(d2-p2) averege = 0.0905874 square sum root = 4.12262 cos_value = 0.504326 ------------------------------------------------------------------------- nj(2008-rice) pre1(dra1-p1-b8) averege = 0.0643953 square sum root = 3.12369 cos_value = 0.600193 pre1(dra1-p1-b16) averege = 0.0516237 square sum root = 2.48123 cos_value = 0.849169 pre2(dra1-p2-b8) averege = 0.0610053 square sum root = 2.85988 cos_value = 0.597294 pre2(dra1-p2-b16) averege = 0.0831602 square sum root = 4.0197 cos_value = 0.626059 pre1(dra2-p1-b8) averege = 0.084642 square sum root = 4.03721 cos_value = 0.759007 pre1(dra2-p1-b16) averege = 0.0610053 square sum root = 2.85988 cos_value = 0.597294 pre2(dra2-p2-b8) averege = 0.0870983 square sum root = 4.13173 cos_value = 0.816434 pre2(dra2-p2-b16) averege = 0.112274 square sum root = 5.41909 cos_value = 0.744891 ------------------------------------------------------------------------------ /////////////////////////////////////////////////////////////////////////////////// TV1.TV2.COS_value upgma(2007) pre1 averege = 0.218553 square sum root = 9.23763 cos_value = 0.354178 pre2 averege = 0.190142 square sum root = 8.18741 cos_value = 0.377085 ------------------------------------------------------------- upgma(2007-15) pre1 averege = 0.245212 square sum root = 16.8321 cos_value = 0.0168566 pre2 averege = 0.21914 square sum root = 15.5783 cos_value = 0.0178468 pre1-rice(b=8) averege = 0.730638 square sum root = 29.7128 cos_value = 0.0245355 pre2-rice(b=8) averege = 0.271887 square sum root = 19.6051 cos_value = 0.0345233 pre1-rice(b=16) averege = 0.282483 square sum root = 20.4416 cos_value = 0.0392706 pre2-rice(b=16) averege = 0.281534 square sum root = 20.4286 cos_value = 0.0402256 -------------------------------------------- upgma(2008) pre1(d1-p1) averege = 0.153092 square sum root = 6.42743 cos_value = 0.476677 pre2(d1-p2) averege = 0.151837 square sum root = 6.36746 cos_value = 0.49831 pre1(d2-p1) averege = 0.13017 square sum root = 5.45936 cos_value = 0.502695 pre2(d2-p2) averege = 0.13336 square sum root = 5.51986 cos_value = 0.507082 -------------------------------------------- upgma(2008-rice) pre1(dra1-p1-b8) averege = 0.140783 square sum root = 5.69323 cos_value = 0.602148 pre1(dra1-p1-b16) averege = 0.0992494 square sum root = 4.18645 cos_value = 0.850227 pre2(dra1-p2-b8) averege = 0.199053 square sum root = 8.14697 cos_value = 0.628866 pre2(dra1-p2-b16) averege = 0.156328 square sum root = 6.56131 cos_value = 0.762099 pre1(dra2-p1-b8) averege = 0.155227 square sum root = 6.26838 cos_value = 0.598804 pre1(dra2-p1-b16) averege = 0.137464 square sum root = 5.68835 cos_value = 0.820196 pre2(dra2-p2-b8) averege = 0.195649 square sum root = 8.05489 cos_value = 0.630226 pre2(dra2-p2-b16) averege = 0.175327 square sum root = 7.47837 cos_value = 0.75112 --------------------------------------------------------------- /////////////////////////////////////////////////////////////////////////////////// TV1.TV2.COS_value quartet(2007) non-pre(tree T's S(T):0.763321 min_TV = 4.97748) averege = 0.10256 square sum root = 4.97748 cos_value = 0.491035 ---------------------------------------------------------------------------------- pre1(non-data tree tree T's S(T):0.76..) averege = 0.0953043 square sum root = 4.92905 cos_value = 0.350916 pre1(tree T's S(T):0.778931 min_TV = 4.95263) averege = 0.0966451 square sum root = 4.96309 cos_value = 0.350807 pre1(tree T's S(T):0.780023 min_TV = 4.8814) averege = 0.0934271 square sum root = 4.8814 cos_value = 0.351221 pre1(tree T's S(T):0.793801 min_TV = 4.97044) averege = 0.096573 square sum root = 4.97044 cos_value = 0.350868 pre1(tree T's S(T):0.801415 min_TV = 4.99813) averege = 0.0972991 square sum root = 4.98721 cos_value = 0.350811 --------------------------------------------------------------------------------------- pre2(tree T's S(T):0.76256 min_TV = 4.9101) averege = 0.0903514 square sum root = 4.9101 cos_value = 0.373861 pre2(tree T's S(T):0.770037 min_TV = 4.93087) averege = 0.0903514 square sum root = 4.93087 cos_value = 0.373791 pre2(tree T's S(T):0.781347 min_TV = 4.98688) averege = 0.0919718 square sum root = 4.98688 cos_value = 0.373495 pre2(tree T's S(T):0.790153 min_TV = 4.99865) averege = 0.0922442 square sum root = 4.99865 cos_value = 0.373455 pre2(tree T's S(T):0.810171 min_TV = 4.93087) averege = 0.0915418 square sum root = 4.93087 cos_value = 0.373686 ------------------------------------------------------------------------------ quartet(2007-15) pre1 averege = 0.256335 square sum root = 12.4018 cos_value = 0.0199777 pre2 averege = 0.248758 square sum root = 12.389 cos_value = 0.0181531 pre1-rice(b=8) averege = 0.294063 square sum root = 13.8375 cos_value = 0.0273412 pre2-rice(b=8) averege = 0.360401 square sum root = 16.9093 cos_value = 0.0385271 pre1-rice(b=16) averege = 0.372329 square sum root = 17.5248 cos_value = 0.0446572 pre2-rice(b=16) averege = 0.390121 square sum root = 18.4503 cos_value = 0.0414795 --------------------------------------------------------------- quartet(2008) pre1(d1-p1) averege = 0.294744 square sum root = 13.8222 cos_value = 0.0254528 pre2(d1-p2) averege = 0.275692 square sum root = 13.2202 cos_value = 0.0270263 pre1(d2-p1) averege = 0.331767 square sum root = 15.8212 cos_value = 0.0279184 pre2(d2-p2) averege = 0.24393 square sum root = 12.3161 cos_value = 0.0282729 ----------------------------------------------------------- quartet(2008-rice) pre1(dra1-p1-b8) averege = 0.803195 square sum root = 32.6971 cos_value = 0.032723 pre1(dra1-p1-b16) averege = 0.902535 square sum root = 36.8786 cos_value = 0.0410279 pre2(dra1-p2-b8) averege = 0.855343 square sum root = 34.7177 cos_value = 0.0323438 pre2(dra1-p2-b16) averege = 0.888123 square sum root = 36.2311 cos_value = 0.0385313 pre1(dra2-p1-b8) averege = 0.814991 square sum root = 33.0937 cos_value = 0.0296713 pre1(dra2-p1-b16) averege = 0.8738 square sum root = 35.7211 cos_value = 0.038745 pre2(dra2-p2-b8) averege = 0.881887 square sum root = 35.7712 cos_value = 0.0365558 pre2(dra2-p2-b16) averege = 0.928363 square sum root = 37.6758 cos_value = 0.0379184